Bur-0 and C24 Genome templates

While examining effects of transposons on gene expression, we built genome templates of Bur-0 and C24 using the paired-end reads published with MPISchneeberger2011. These reads give about 80x genome coverage and allowed prediction of transposon deletions in Bur-0 and C24 compared to Col-0.

We used the SHORE pipeline to align the reads to the Col-0 reference genome and extracted the consensus sequences as genome templates by calling bases with quality>24, support>6, concordance>0.7 and average hits = 1.


All data is available for download in our Data Center.


For any questions concerning the data contact Xi Wang, for any problems downloading/accessing the data contact Joffrey Fitz.