SHORE, for Short Read, is a mapping and analysis pipeline for short read data produced on the Illumina platform. It allows the incorporation of different aligners, and its different modules support a range of experiments, such as resequencing, mapping of mutants, ChIP-seq analyses and several more.
SHORE is now hosted on sourceforge. We provide source code and precompiled binaries. Find SHORE here:
Read the manual here:
If you have any questions, don't hesitate to contact us: or .
If you're looking for SHOREmap, please visit the SHOREmap project site.