SHORE

SHORE, for Short Read, is a mapping and analysis pipeline for short read data produced on the Illumina platform. It allows the incorporation of different aligners, and its different modules support a range of experiments, such as resequencing, mapping of mutants, ChIP-seq analyses and several more.

Download SHORE

SHORE is now hosted on sourceforge. We provide source code and precompiled binaries. Find SHORE here:

http://sourceforge.net/projects/shore/files


Read the manual here:

http://shore.sourceforge.net/wiki/

Contact

If you have any questions, don't hesitate to contact us: or .

SHOREmap

If you're looking for SHOREmap, please visit the SHOREmap project site.