1001 Genomes
A Catalog of Arabidopsis thaliana Genetic Variation
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Related publication

Ossowski S, Schneeberger K, Clark RM et al.
Sequencing of natural strains of Arabidopsis thaliana with short reads.
Genome Res. 2008 Dec;18(12):2024-33. Epub 2008 Sep 25.

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SHORE, for Short Read, is a mapping and analysis pipeline for short read data produced on the Illumina platform. It allows the incorporation of different aligners, and its different modules support a range of experiments, such as resequencing, mapping of mutants, ChIP-seq analyses and several more.

Download SHORE

SHORE is now hosted on sourceforge. We provide source code and precompiled binaries. Find SHORE here:


Read the manual here:



If you have any questions, don't hesitate to contact us: or .


If you're looking for SHOREmap, please visit the SHOREmap project site.