Here we provide the genome sequences of four Arabidopsis thaliana accessions. The sequences are assembled from Illumina sequence reads only accounting for ~50 to 200x genome coverage. We used two to three different sequencing libraries per genome at varying insert size lengths (200bp to 5kb).

The assembly process followed a homology-guided strategy in order to make use of the Col-0 reference sequence, though excluding the centromeres (as defined by Clark et al, Science, 2007).

For more information please see:

Reference-guided assembly of four diverse Arabidopsis thaliana genomes.
Korbinian Schneeberger, Stephan Ossowski, Felix Ott, Juliane D. Klein, Xi Wang, Christa Lanz, Lisa M. Smith, Jun Cao, Joffrey Fitz, Norman Warthmann, Stefan R. Henz, Daniel H. Huson, and Detlef Weigel (2011).
Proc Natl Acad Sci U S A, 108(25):10249-54.

This Whole Genome Shotgun project has been deposited at DDBJ/EMBL/GenBank under the accession AFMZ00000000 (Ler-1), AFNA00000000 (Bur-0), AFNB00000000 (C24) and AFNC00000000 (Kro-0).

Downloads

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Institute	Sample	Min Contig Len	Download Links
MPI	C24	500	Assemblies SNP Marker Reads WGA Variants PAV
MPI	Bur-0	500	Assemblies SNP Marker Reads WGA Variants PAV
MPI	Kro-0	500	Assemblies SNP Marker Reads WGA Variants PAV
MPI	Ler-1	500	Assemblies SNP Marker Reads WGA Variants PAV

Browse all data in our Data Center and see the Readme for more information on released data files and formats.

Tools

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Search our assemblies and download selected scaffolds using our BLAST frontend.

Gene alignments and variants can be viewed with Alivie.

Contact

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For any questions concerning the data contact Korbinian Schneeberger, for any problems downloading/accessing the data contact Joffrey Fitz.