Tools

easyGWAS

easyGWAS is an integrated interspecies platform for performing and comparing genome-wide association studies.

GWAPP

GWAPP enables reseachers working with Arabidopsis thaliana to do Genome Wide Association Mapping (GWAS) on their phenotypes .

1001 Proteomes: An Arabidopsis thaliana non-synonymous SNP browser

The 1001 Proteomes portal provides a simple way to browse changes to proteins caused by non-synonymous single nucleotide polymorphisms (nsSNPs) in accessions or natural variants of Arabidopsis thaliana.

GBrowse

Browse analysed sequences for 80 MPI strains.

POLYMORPH

POLYMORPH is a collection of databases and web applications for storage, retrieval analysis and visualization of polymorphism data from whole genome re-sequencing projects.

BLAST

Search assembled genomes by the MPI and download scaffolds.

Alivie

View gene alignments for assembled MPI genomes.

TAIR Converter

T8T9 converts TAIR8 coordinates to TAIR9/TAIR10 and vice versa.

Col-0 DB

Col-0 DB is a catalog of variations and sequencing errors in the reference strain Col-0.