1001 Genomes
A Catalog of Arabidopsis thaliana Genetic Variation
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Arabidopsis thaliana assemblies

Here we provide the genome sequences of four Arabidopsis thaliana accessions. The sequences are assembled from Illumina sequence reads only accounting for ~50 to 200x genome coverage. We used two to three different sequencing libraries per genome at varying insert size lengths (200bp to 5kb).

The assembly process followed a homology-guided strategy in order to make use of the Col-0 reference sequence, though excluding the centromeres (as defined by Clark et al, Science, 2007).

For more information please see:

Reference-guided assembly of four diverse Arabidopsis thaliana genomes.
Korbinian Schneeberger, Stephan Ossowski, Felix Ott, Juliane D. Klein, Xi Wang, Christa Lanz, Lisa M. Smith, Jun Cao, Joffrey Fitz, Norman Warthmann, Stefan R. Henz, Daniel H. Huson, and Detlef Weigel (2011).
Proc Natl Acad Sci U S A, 108(25):10249-54.

This Whole Genome Shotgun project has been deposited at DDBJ/EMBL/GenBank under the accession AFMZ00000000 (Ler-1), AFNA00000000 (Bur-0), AFNB00000000 (C24) and AFNC00000000 (Kro-0).

Downloads

Institute Sample Min Contig Len Download Links
MPI C24 500 Assemblies
SNP Marker
Reads
WGA Variants
PAV
MPI Bur-0 500 Assemblies
SNP Marker
Reads
WGA Variants
PAV
MPI Kro-0 500 Assemblies
SNP Marker
Reads
WGA Variants
PAV
MPI Ler-1 500 Assemblies
SNP Marker
Reads
WGA Variants
PAV


Contact

For any questions concerning the data contact , for any problems downloading/accessing the data contact .