The genome of the Arabidopsis thaliana accession Niederzenz-1 (Nd-1, N1636) was sequenced using the Illumina short read platform and the 454 platform. Nd-1 is one parent of two reciprocal recombinant inbred lines (RILs) derived from the accessions C24 (N906) and Nd-1 generated in the lab of Thomas Altmann. These RILs have been used in the identification of metabolic and biomass QTL.
34167343 illumina short-reads and 3197257 454 reads were aligned against the genome sequence of the Arabidopsis reference accession Columbia (Col-0) genome (release TAIR10) to a depth of 19.4 respective 8.20197. Using the SHORE pipeline to identify variations of Nd-1 to TAIR-10 revealed 209700 SNPs and 18936 1-3 bp insertions for the 454 sequencing, as well as 503588 SNPs and 45353 1-3 bp insertions for the Illumina sequencing. Additional information about Copy Number Variations, copy variable positions, deletions, duplications and heterozygous positions is also provided.
All data is available for download in our Data Center.