1001 Genomes
A Catalog of Arabidopsis thaliana Genetic Variation
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News

October 24, 2016
Publication on AraPheno is now online (NAR).
September 13, 2016
AraPheno, a public database collection of Arabidopsis thaliana phenotypes, is now online.
July 15, 2016
1001 Epigenomes published.
June 10, 2016
1135 genomes Reveal the Global Pattern of Polymorphism in Arabidopsis thaliana published online.
April 25, 2016
New tool for extracting and downloading VCF subsets now available.
January 28, 2016
New 1001G Tools for sequence download and strain identification are now online.
May 19, 2015
Accession list updated to final set of 1135 strains.
February 23, 2014
Chi-2 and Seattle-0 assemblies generated by SLU are now available in the Data Center.
August 1, 2013
SHOREmap v2.1 released.
August 6, 2012
Nd-1, sequenced by Center for Biotechnology of the University of Bielefeld (CeBiTec), is now available in the Data Center. See the project page for more information.
November 29, 2011
JGI strains Bay-0 and Sha (both TAIR10) are now available in the Data Center. See the project page for more information.
November 15, 2011
JGI strains (Alc-0, Blh-1, Jea, Oy-0, Ri-0 and Sakata) are now available in the Data Center.
August 28, 2011
August 4, 2011
Accession list updated for 171 Salk strains and 180 GMI strands.
Ws-2, Tnz-1 and Strand-1 (sequenced and analyzed by the MPI and MPIZ) are now available.
May 31, 2011
Short reads in FASTQ format for 80 strains generated by the MPI are now available in the Data Center.
May 31, 2011
SNP data for 180 strains generated by the GMI are now available in the Data Center.
May 31, 2011
De novo assembly of Ler-1 using ALLPATHS-LG is available here.
April 21, 2011
Quaility variant data for 130 strains generated by the Salk Institute are now available in the Data Center.
October 22, 2010
POLYMORPH is available for 80 A. thaliana strains.
September 24, 2010
We've updated the website:
* The downloads section was renamed to Software. Only software is listed there now, all data stuff was pushed into the Data Center.
* SHOREmap has it's own project site now.
* The Data Center has now a frontpage with short project descriptions.
* MPISchneeberger2011 has now a project page linking to downloads, BLAST and Alivie.
July 28, 2010
Sequences of the Arabidopsis thaliana assemblies for C24, Bur-0 and Kro-0 are available for download now.
July 1, 2010
The Weigel-Lab released over 1.7 million SNPs for C24, Bur-0, Kro-0 and Ler-1.
July 1, 2010
C24, Bur-0 and Kro-0 assembled sequences are available now.
Check our BLAST frontend to search the assemblies and download scaffolds.
May 3, 2010
A collection of 80 A. thaliana accessions sequenced as part of the 1001 Genomes Project is available from ABRC. Each of the accessions is an inbred line that can be ordered as an individual line or as a set (CS76427). These stocks can be found using the ABRC catalog.
February 2, 2010
The Weigel laboratory has just released 80 Arabidopsis thaliana genomes sequenced with paired end Illumina short reads. SNPs and structure variants (SVs) are now available online.
May 26, 2009
PE sequencing of 80 accessions finished.
March 19, 2009
New software release from the Weigel Lab. See download section for the lastest SHORE version.
December 5, 2008
PE sequencing of 40 accessions finished.
September 30, 2008
Production sequencing of the first 80 strains started today.
September 25, 2008
The Weigel laboratory has just published the first two genomes sequenced with short reads. They have identified SNPs as well as short indels of 1-3 bp by mapping to the reference genome, as well as larger indels using a novel targeted assembly approach.

Ossowski, S., Schneeberger, K., Clark, R. M., Lanz, C., and Weigel, D. (2008) Sequencing of natural strains of Arabidopsis thaliana with short reads. Genome Res.,published online.
September 17, 2008
823,325 SNPs and 79,961 indels for Bur-0 and Tsu-1 now available on TAIR's GBrowse and FTP site.