News

Sequences of the Arabidopsis thaliana assemblies for C24, Bur-0 and Kro-0 are available for download now.

The Weigel-Lab released over 1.7 million SNPs for C24, Bur-0, Kro-0 and Ler-1.

C24, Bur-0 and Kro-0 assembled sequences are available now.
Check our BLAST frontend to search the assemblies and download scaffolds.

A collection of 80 A. thaliana accessions sequenced as part of the 1001 Genomes Project is available from ABRC. Each of the accessions is an inbred line that can be ordered as an individual line or as a set (CS76427). These stocks can be found using the ABRC catalog.

The Weigel laboratory has just released 80 Arabidopsis thaliana genomes sequenced with paired end Illumina short reads. SNPs and structure variants (SVs) are now available online.

The Weigel lab released new software for short read mapping.
See download section for the latest version: downloads.

Detlef Weigel and Richard Mott The 1001 Genomes Project for Arabidopsis thaliana. Genome Biology 2009, 10:107. Published: 27 May 2009

The electronic version can be found online here.

PE sequencing of 80 accessions finished.

New software release from the Weigel Lab. See download section for the lastest SHORE version.

PE sequencing of 40 accessions finished.

Production sequencing of the first 80 strains started today.

The Weigel laboratory has just published the first two genomes sequenced with short reads. They have identified SNPs as well as short indels of 1-3 bp by mapping to the reference genome, as well as larger indels using a novel targeted assembly approach.

Ossowski, S., Schneeberger, K., Clark, R. M., Lanz, C., and Weigel, D. (2008) Sequencing of natural strains of Arabidopsis thaliana with short reads. Genome Res.,published online.

823,325 SNPs and 79,961 indels for Bur-0 and Tsu-1 now available on TAIR's GBrowse and FTP site.