GenomeMapper

GenomeMapper is a short read mapping tool designed for accurate read alignments. It quickly aligns millions of reads either with ungapped or gapped alignments. This version is used to align against a single reference. If you are unsure which one is the appropriate GenomeMapper, you might want to use this one.

For SHORE and WMD3 please use this version:

GenomeMapper - stable releases
Single reference alignments

Release	Date	Download
Release 0.4.2stable	2010-06-25	source code including documentation Bug fixed and a few new options
Release 0.4.1stable	2009-12-14	source code including documentation
Release 0.3.2stable	2009-08-11	source code including documentation Updated README
Release 0.3.0stable	2009-08-07	source code including documentation

For versions with more options please use these beta versions:

GenomeMapper - beta releases
Single reference alignments

Release	Date	Download
Release 0.4.0beta	2009-07-28	source code including documentation This version implements threading for a parallelized version of GenomeMapper.
Release 0.3.1beta	2009-06-04	source code including documentation This version implements sophisticated memory sharing for the index handling. Therefore it is not complatible with the old GenomeMapper versions. Simply re-new your indices.
Release 0.2.2beta	2009-02-03	source code including documentation
Release 0.2.1beta	2008-12-16	source code including documentation
Release 0.2.0beta	2008-11-28	source code including documentation
Release 0.1.1beta	2008-11-19	source code including documentation
Release 0.1beta	2008-11-19	source code including documentation