1001 Genomes
A Catalog of Arabidopsis thaliana Genetic Variation
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News

February 2, 2010
The Weigel laboratory has just released 80 Arabidopsis thaliana genomes sequenced with paired end Illumina short reads. SNPs and structure variants (SVs) are now available online.
June 04, 2009
The Weigel lab released new software for short read mapping.
See download section for the latest version: downloads.
May 27, 2009
Detlef Weigel and Richard Mott The 1001 Genomes Project for Arabidopsis thaliana. Genome Biology 2009, 10:107. Published: 27 May 2009

The electronic version can be found online here.
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Welcome to the 1001 Genomes Project

The 1001 Genomes Vision

The 1001 Genomes Project has a simple goal: to discover the whole-genome sequence variation in 1001 strains (accessions) of the reference plant Arabidopsis thaliana. The resulting information will pave the way for a new era of genetics that combines large-scale association studies in wild strains with forward genetic analyses in experimental crosses, in order to identify alleles underpinning phenotypic diversity across the entire genome and the entire species. The analyses enabled by this project will have broad implications for areas as diverse as evolutionary sciences, plant breeding and human genetics.

This 1001 Genomes Project is particularly timely because the current technological revolution in sequencing means that it is now feasible to resequence large numbers of genomes. Indeed, a 1000 Genomes project for humans has just been launched. There are, however, several important differences between the two projects. The most important one is that each of the accessions in the Arabidopsis 1001 Genomes project is an inbred line with seeds that will be freely available from the stock centre to all our colleagues. Unlimited numbers of plants with identical genotype can be grown and phenotyped for each accession, in as many environments as desired, and so the sequence information we collect can be used directly in association studies at biochemical, metabolic, physiological, morphological, and whole plant-fitness levels.

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